Working on getting code to work on Boogaloo. Mostly focusing on the Make file, but also found an error in the python config script.

added H(x,y) , also reading the maximum of H(x,y) determined in the config script config_jet_pawel.py as parameter.  doEnergy function still needs fixing

Added modified Python script to generate initial_conditions.nc where H(x,y) is read in a 2D array.  The maximum of that array is also read in as a parameter, to be used to determine dt at runtime.