1. 19 Apr, 2016 1 commit
  2. 10 Jun, 2015 1 commit
  3. 29 Sep, 2014 1 commit
    • Christopher Subich's avatar
      Removed old "Transformer" code · 1a1c8814
      Christopher Subich authored
      The pair of Transformer.[ch]pp files contained old code built for SPINS
      before parallel transformation (over MPI) was fully implemented.  These
      classes were replaced wholesale with Parformer.[ch]pp (Parallel
      Transformer), but the older code remained in the repository.
      
      Removing these files should not affect any active code.  It will affect
      certain disued test cases (subject to changing #includes), but these
      cases themselves need more serious maintenance to update for the
      "gradient object" interface.
      1a1c8814
  4. 10 Sep, 2014 1 commit
    • Michael Dunphy's avatar
      Embed the case file source in the SPINS binary. · 1d616e81
      Michael Dunphy authored
      The case file source code is embedded into the binary at compile time.
      At runtime, the source code is printed to spinscase.cpp. This eliminates
      the need to maintain a copy of the case file alongside the binary.
      1d616e81
  5. 02 Oct, 2013 1 commit
  6. 28 Dec, 2012 1 commit
    • Christopher Subich's avatar
      Update of belize build · 424c991f
      Christopher Subich authored
      This adds -lblas to the lapack library flag, because with the last
      update the toolchain on Belize is more strict about implicit library
      inclusions.
      
      Also, the library flags have been re-ordered in the general makefile,
      going (roughly) from most specific to least.
      424c991f
  7. 20 Aug, 2012 1 commit
    • Christopher Subich's avatar
      Included Options/-lboost_program_options at build · 0691d1f9
      Christopher Subich authored
      Also included an add_option speicalization for the string parameter
      type.  It's convenient to allow for const char * as a default value for
      these parameters, but that poses a problem for the templated add_option
      function because of the lack of automatic conversion to const string.
      By including a specialized overload of the template (with
      implementation in Options.cpp), this problem is fixed.
      0691d1f9
  8. 16 Aug, 2012 1 commit
    • Christopher Subich's avatar
      Initial commit of command-line/config-file parser · 99679ff2
      Christopher Subich authored
      This library uses boost::program_options, which provides a command-line
      parser that also reads key=value - style configuration files.
      Options.c/hpp provides a simplified interface for cases-code, which
      should make option-definition more natural.
      99679ff2
  9. 14 Aug, 2012 1 commit
    • Christopher Subich's avatar
      Re-ordered makefile libraries, putting fftw first · 6b87e692
      Christopher Subich authored
      On systems using the MKL library, including the MKL (via $(LAPACK_LIB))
      brings in the MKL fftw-wrapper bindings, rather than fftw itself.  This
      is problematic on account of the fact that the MKL fftw wrapper doesn't
      implement the parts of the library that SPINS actually uses; this leads
      to an assertion failure on startup.
      6b87e692
  10. 09 Aug, 2012 1 commit
    • Christopher Subich's avatar
      Plata system configuration file · 55c4abf3
      Christopher Subich authored
      Also tweaked make_deps to properly install AMD and to
      pick up on SYSTEM_CFLAGS (necessary for 32/64-bit
      switch on plata).  Consequently, added SYSTEM_CXXFLAGS
      since -Wno-deprecated is inappropriate for pure-C
      55c4abf3
  11. 08 Aug, 2012 3 commits
  12. 30 Jul, 2012 1 commit
    • Christopher Subich's avatar
      Initial commit · 58fbdb5d
      Christopher Subich authored
      This is the initial commit of SPINS to a git repository, coming from
      an essentially unmanaged environment.  While this is a *complete*
      archive, this is probably not the most useful form for development
      going forward.  Notably, the future management should be:
      
      1) Pare down the case files
      
      2) Establish branches for individual users.  Not as a long-term goal,
         but instead to keep user-specific case files from lingering in
         the main repository long after their use is obsolete.
      
      2b) Establish semipermanent branches for typical users.  A release
         branch should include the basic documentation cases, a benchmark
         case should include benchmarking cases, and there are probably
         others that aren't coming to mind now.
      
      3) Add helpful MATLAB processing scripts to the repository.  Too
         much of that is ad-hoc now, completely unmanaged.
      
      4) For papers/etc, establish tagged versions.
      58fbdb5d