diff --git a/Manifest.toml b/Manifest.toml
index 3f34f6ba0f1e7c538dfa28d6d465a422dec0239b..9e89518b459d99d489b8e8c7e4c75ac65c2238ca 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -15,10 +15,10 @@ version = "2.1.0"
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 
 [[ArnoldiMethod]]
-deps = ["DelimitedFiles", "LinearAlgebra", "Random", "SparseArrays", "Test"]
-git-tree-sha1 = "a5f9581eaf9371fe12b4a0b12c05690b45912e71"
+deps = ["LinearAlgebra", "Random", "StaticArrays"]
+git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
 uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.0.2"
+version = "0.1.0"
 
 [[Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -58,9 +58,9 @@ version = "0.9.0"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "89a0b14325d0f02f9caed7c8ba91181a5d254874"
+git-tree-sha1 = "53fed426c9af1eb68e63b3999e96454c2db79757"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "0.9.26"
+version = "0.9.27"
 
 [[ColorSchemes]]
 deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
@@ -112,15 +112,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
 version = "4.0.4"
 
 [[DataAPI]]
-git-tree-sha1 = "ad84f52c0b8f05aa20839484dbaf01690b41ff84"
+git-tree-sha1 = "25ccd31003243d2ce83e474cf11663dddf48035f"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.4.0"
+version = "1.4.1"
 
 [[DataFrames]]
 deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "b46e1deb4592a5df7416b10dfcd6b01fb194ab9a"
+git-tree-sha1 = "c5f9f2385a52e35c75efd90911091f8a749177a5"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "0.22.2"
+version = "0.22.4"
 
 [[DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -152,9 +152,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "5c6a645ea65af6aac4f96b5dedaae660b7b56267"
+git-tree-sha1 = "f0e06a5b5ccda38e2fb8f59d91316e657b67047d"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.24.10"
+version = "0.24.12"
 
 [[Downloads]]
 deps = ["ArgTools", "LibCURL", "NetworkOptions"]
@@ -186,9 +186,9 @@ version = "4.3.1+4"
 
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays"]
-git-tree-sha1 = "ff537e5a3cba92fb48f30fec46723510450f2c0e"
+git-tree-sha1 = "50eabdace27aa27b143f65b65e762bb0112a7708"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.10.2"
+version = "0.11.1"
 
 [[FixedPointNumbers]]
 deps = ["Statistics"]
@@ -244,9 +244,9 @@ version = "0.53.0+0"
 
 [[GeometryBasics]]
 deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
-git-tree-sha1 = "876f77f0d3253e882ff588af1c95d0e4a86c9766"
+git-tree-sha1 = "f574945bcabe9805b78292216279c1be910168bb"
 uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
-version = "0.3.5"
+version = "0.3.8"
 
 [[Gettext_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@@ -271,6 +271,12 @@ git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
 version = "0.8.19"
 
+[[ImportAll]]
+deps = ["Test"]
+git-tree-sha1 = "5aa65f6204e1b68dfef024421e61fbcacecfbfa6"
+uuid = "c65182e5-40f4-518f-8165-175b85689199"
+version = "1.1.0"
+
 [[Inflate]]
 git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
@@ -422,9 +428,9 @@ version = "2.34.0+7"
 
 [[LightGraphs]]
 deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
-git-tree-sha1 = "677464beb4a91772d151ee62ea5e181d4b7f50ec"
+git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6"
 uuid = "093fc24a-ae57-5d10-9952-331d41423f4d"
-version = "1.3.4"
+version = "1.3.5"
 
 [[LinearAlgebra]]
 deps = ["Libdl"]
@@ -466,9 +472,9 @@ version = "0.1.0"
 
 [[Missings]]
 deps = ["DataAPI"]
-git-tree-sha1 = "ed61674a0864832495ffe0a7e889c0da76b0f4c8"
+git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
-version = "0.4.4"
+version = "0.4.5"
 
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
@@ -571,9 +577,9 @@ version = "1.0.10"
 
 [[Plots]]
 deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
-git-tree-sha1 = "4797acb266b8d9ff316f4581924e71c6709f152d"
+git-tree-sha1 = "3acf7ee21b0c0ea99ef0815e7768c1c0fde82629"
 uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-version = "1.10.1"
+version = "1.10.2"
 
 [[PooledArrays]]
 deps = ["DataAPI"]
@@ -583,9 +589,9 @@ version = "0.5.3"
 
 [[PrettyTables]]
 deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
-git-tree-sha1 = "237170206bf38a66fee4d845f4ae57f63788eeb0"
+git-tree-sha1 = "42126c4e2677cdc664baea004c98cc60a664fe40"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "0.10.1"
+version = "0.11.0"
 
 [[Printf]]
 deps = ["Unicode"]
@@ -629,10 +635,9 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c"
 version = "0.2.1"
 
 [[Reexport]]
-deps = ["Pkg"]
-git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
+git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
-version = "0.2.0"
+version = "1.0.0"
 
 [[Referenceables]]
 git-tree-sha1 = "4a32b1dd124a846580608eb347d4337f873c2499"
@@ -712,9 +717,9 @@ version = "1.2.1"
 
 [[SplittablesBase]]
 deps = ["Setfield", "Test"]
-git-tree-sha1 = "e6e5e266aa58c2e419d19e8eccbe6af55d5dc6e1"
+git-tree-sha1 = "c2b4f3cd29827787a5f61afe12ea13222197ab98"
 uuid = "171d559e-b47b-412a-8079-5efa626c420e"
-version = "0.1.11"
+version = "0.1.12"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
@@ -746,9 +751,9 @@ version = "0.4.4"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
-git-tree-sha1 = "d94235fcdc4a09649f263365c5f7e4ed4ba6ed34"
+git-tree-sha1 = "65a43f5218197bc7091b76bc273a5e323a1d7b0d"
 uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
-version = "1.2.1"
+version = "1.2.3"
 
 [[SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
@@ -766,9 +771,9 @@ version = "1.0.0"
 
 [[Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "240d19b8762006ff04b967bdd833269ad642d550"
+git-tree-sha1 = "8dc2bb7d3548e315d890706547b24502ed79504f"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.2.2"
+version = "1.3.1"
 
 [[Tar]]
 deps = ["ArgTools", "SHA"]
@@ -786,9 +791,9 @@ version = "0.1.7"
 
 [[Transducers]]
 deps = ["ArgCheck", "BangBang", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
-git-tree-sha1 = "eb5d4ff48c25762319f1aae0e5b501394beaefd7"
+git-tree-sha1 = "02413f5795ad272f9f9912e4e4c83d9b1572750c"
 uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999"
-version = "0.4.56"
+version = "0.4.58"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]
@@ -958,9 +963,9 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
 
 [[Zstd_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "6f1abcb0c44f184690912aa4b0ba861dd64f11b9"
+git-tree-sha1 = "2c1332c54931e83f8f94d310fa447fd743e8d600"
 uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
-version = "1.4.5+2"
+version = "1.4.8+0"
 
 [[ZygoteRules]]
 deps = ["MacroTools"]
diff --git a/Project.toml b/Project.toml
index efd6d17a218fa52487519d2d2d4d90c0099bfbc4..918c1d1896179392076ab01286754975fd938486 100644
--- a/Project.toml
+++ b/Project.toml
@@ -9,6 +9,7 @@ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
+ImportAll = "c65182e5-40f4-518f-8165-175b85689199"
 LightGraphs = "093fc24a-ae57-5d10-9952-331d41423f4d"
 NamedTupleTools = "d9ec5142-1e00-5aa0-9d6a-321866360f50"
 NetworkLayout = "46757867-2c16-5918-afeb-47bfcb05e46a"
diff --git a/covidabm.code-workspace b/covidabm.code-workspace
new file mode 100644
index 0000000000000000000000000000000000000000..9f0b9513914f04fecdd41cd76a83d2d10eb9c454
--- /dev/null
+++ b/covidabm.code-workspace
@@ -0,0 +1,9 @@
+{
+	"folders": [
+		{
+			"name": "CovidAlertVaccinationModel",
+			"path": "."
+		}
+	],
+	"settings": {}
+}
\ No newline at end of file
diff --git a/data/csv/COVID_ontario_data.csv b/data/csv/COVID_ontario_data.csv
index ce5ba96bc6917d30cd010d624ad83f15c75a115c..409d14c25eb856d5d913d6ad6b98df17a3c4e5bc 100644
Binary files a/data/csv/COVID_ontario_data.csv and b/data/csv/COVID_ontario_data.csv differ
diff --git a/data/csv/distancing_data.csv b/data/csv/distancing_data.csv
new file mode 100644
index 0000000000000000000000000000000000000000..064a9f947f7572ab72e6763539ff435fb1a41191
--- /dev/null
+++ b/data/csv/distancing_data.csv
@@ -0,0 +1,346 @@
+country_region_code,country_region,sub_region_1,sub_region_2,metro_area,iso_3166_2_code,census_fips_code,date,retail_and_recreation_percent_change_from_baseline,grocery_and_pharmacy_percent_change_from_baseline,parks_percent_change_from_baseline,transit_stations_percent_change_from_baseline,workplaces_percent_change_from_baseline,residential_percent_change_from_baseline
+CA,Canada,Ontario,,,CA-ON,,2020-02-15,2,3,20,5,1,-1
+CA,Canada,Ontario,,,CA-ON,,2020-02-16,16,13,44,5,-2,-2
+CA,Canada,Ontario,,,CA-ON,,2020-02-17,-26,-37,70,-40,-72,16
+CA,Canada,Ontario,,,CA-ON,,2020-02-18,-1,12,-5,2,0,1
+CA,Canada,Ontario,,,CA-ON,,2020-02-19,0,4,-4,-2,1,0
+CA,Canada,Ontario,,,CA-ON,,2020-02-20,4,4,3,0,2,0
+CA,Canada,Ontario,,,CA-ON,,2020-02-21,1,-3,11,-1,-7,1
+CA,Canada,Ontario,,,CA-ON,,2020-02-22,8,6,44,11,7,-2
+CA,Canada,Ontario,,,CA-ON,,2020-02-23,12,6,53,9,5,-1
+CA,Canada,Ontario,,,CA-ON,,2020-02-24,2,2,18,-2,2,0
+CA,Canada,Ontario,,,CA-ON,,2020-02-25,1,7,2,1,3,0
+CA,Canada,Ontario,,,CA-ON,,2020-02-26,-8,-5,-15,-6,-2,3
+CA,Canada,Ontario,,,CA-ON,,2020-02-27,-13,-12,-17,-5,-8,5
+CA,Canada,Ontario,,,CA-ON,,2020-02-28,-5,-4,-10,-1,-1,2
+CA,Canada,Ontario,,,CA-ON,,2020-02-29,5,6,9,6,8,-1
+CA,Canada,Ontario,,,CA-ON,,2020-03-01,11,10,23,4,6,-1
+CA,Canada,Ontario,,,CA-ON,,2020-03-02,2,4,0,-2,4,0
+CA,Canada,Ontario,,,CA-ON,,2020-03-03,1,3,-6,0,4,0
+CA,Canada,Ontario,,,CA-ON,,2020-03-04,4,4,1,0,4,0
+CA,Canada,Ontario,,,CA-ON,,2020-03-05,6,6,21,2,0,0
+CA,Canada,Ontario,,,CA-ON,,2020-03-06,-3,-4,-4,-3,3,1
+CA,Canada,Ontario,,,CA-ON,,2020-03-07,10,9,41,8,9,-1
+CA,Canada,Ontario,,,CA-ON,,2020-03-08,13,10,86,6,5,-1
+CA,Canada,Ontario,,,CA-ON,,2020-03-09,4,5,41,-3,3,1
+CA,Canada,Ontario,,,CA-ON,,2020-03-10,1,4,-2,-4,3,1
+CA,Canada,Ontario,,,CA-ON,,2020-03-11,3,7,1,-5,2,1
+CA,Canada,Ontario,,,CA-ON,,2020-03-12,6,32,9,-6,1,1
+CA,Canada,Ontario,,,CA-ON,,2020-03-13,-3,41,-7,-16,-4,3
+CA,Canada,Ontario,,,CA-ON,,2020-03-14,-10,26,5,-17,0,3
+CA,Canada,Ontario,,,CA-ON,,2020-03-15,-10,14,44,-22,-6,4
+CA,Canada,Ontario,,,CA-ON,,2020-03-16,-12,27,10,-39,-31,11
+CA,Canada,Ontario,,,CA-ON,,2020-03-17,-29,15,2,-46,-39,15
+CA,Canada,Ontario,,,CA-ON,,2020-03-18,-36,1,1,-51,-44,17
+CA,Canada,Ontario,,,CA-ON,,2020-03-19,-38,2,11,-54,-47,19
+CA,Canada,Ontario,,,CA-ON,,2020-03-20,-45,-8,-15,-56,-49,21
+CA,Canada,Ontario,,,CA-ON,,2020-03-21,-48,-12,16,-49,-34,13
+CA,Canada,Ontario,,,CA-ON,,2020-03-22,-51,-22,6,-55,-38,12
+CA,Canada,Ontario,,,CA-ON,,2020-03-23,-47,-13,-39,-66,-55,22
+CA,Canada,Ontario,,,CA-ON,,2020-03-24,-48,-12,-6,-64,-57,22
+CA,Canada,Ontario,,,CA-ON,,2020-03-25,-54,-23,5,-67,-61,25
+CA,Canada,Ontario,,,CA-ON,,2020-03-26,-55,-22,-10,-68,-61,26
+CA,Canada,Ontario,,,CA-ON,,2020-03-27,-54,-21,10,-67,-61,26
+CA,Canada,Ontario,,,CA-ON,,2020-03-28,-60,-29,-31,-65,-46,16
+CA,Canada,Ontario,,,CA-ON,,2020-03-29,-59,-33,-14,-66,-46,14
+CA,Canada,Ontario,,,CA-ON,,2020-03-30,-55,-27,-34,-71,-63,25
+CA,Canada,Ontario,,,CA-ON,,2020-03-31,-51,-17,-27,-69,-62,24
+CA,Canada,Ontario,,,CA-ON,,2020-04-01,-51,-21,1,-69,-63,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-02,-51,-20,3,-69,-63,26
+CA,Canada,Ontario,,,CA-ON,,2020-04-03,-55,-22,-28,-70,-62,27
+CA,Canada,Ontario,,,CA-ON,,2020-04-04,-57,-27,-18,-63,-46,16
+CA,Canada,Ontario,,,CA-ON,,2020-04-05,-60,-32,-11,-67,-47,14
+CA,Canada,Ontario,,,CA-ON,,2020-04-06,-55,-23,-5,-70,-63,24
+CA,Canada,Ontario,,,CA-ON,,2020-04-07,-55,-18,-21,-69,-63,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-08,-52,-14,-10,-69,-64,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-09,-44,7,-31,-68,-64,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-10,-82,-67,-38,-81,-86,36
+CA,Canada,Ontario,,,CA-ON,,2020-04-11,-54,-9,-20,-62,-48,16
+CA,Canada,Ontario,,,CA-ON,,2020-04-12,-80,-68,-20,-70,-55,15
+CA,Canada,Ontario,,,CA-ON,,2020-04-13,-58,-25,-47,-75,-69,27
+CA,Canada,Ontario,,,CA-ON,,2020-04-14,-52,-14,-31,-70,-63,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-15,-53,-20,-37,-70,-63,26
+CA,Canada,Ontario,,,CA-ON,,2020-04-16,-54,-19,-32,-70,-63,27
+CA,Canada,Ontario,,,CA-ON,,2020-04-17,-56,-23,-33,-69,-62,28
+CA,Canada,Ontario,,,CA-ON,,2020-04-18,-58,-27,-11,-58,-43,15
+CA,Canada,Ontario,,,CA-ON,,2020-04-19,-61,-36,-36,-66,-44,14
+CA,Canada,Ontario,,,CA-ON,,2020-04-20,-53,-23,-5,-68,-62,24
+CA,Canada,Ontario,,,CA-ON,,2020-04-21,-56,-26,-44,-70,-62,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-22,-54,-22,-27,-69,-62,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-23,-54,-21,-25,-68,-62,26
+CA,Canada,Ontario,,,CA-ON,,2020-04-24,-56,-25,-19,-67,-61,26
+CA,Canada,Ontario,,,CA-ON,,2020-04-25,-56,-25,22,-54,-41,14
+CA,Canada,Ontario,,,CA-ON,,2020-04-26,-59,-32,-36,-65,-43,14
+CA,Canada,Ontario,,,CA-ON,,2020-04-27,-51,-20,19,-65,-60,23
+CA,Canada,Ontario,,,CA-ON,,2020-04-28,-51,-18,-3,-65,-61,18
+CA,Canada,Ontario,,,CA-ON,,2020-04-29,-53,-23,-31,-68,-61,25
+CA,Canada,Ontario,,,CA-ON,,2020-04-30,-51,-18,-24,-67,-61,26
+CA,Canada,Ontario,,,CA-ON,,2020-05-01,-51,-18,10,-63,-59,25
+CA,Canada,Ontario,,,CA-ON,,2020-05-02,-54,-23,1,-54,-39,14
+CA,Canada,Ontario,,,CA-ON,,2020-05-03,-49,-21,62,-52,-36,11
+CA,Canada,Ontario,,,CA-ON,,2020-05-04,-49,-18,-3,-66,-59,23
+CA,Canada,Ontario,,,CA-ON,,2020-05-05,-48,-14,4,-64,-59,23
+CA,Canada,Ontario,,,CA-ON,,2020-05-06,-47,-15,16,-63,-59,23
+CA,Canada,Ontario,,,CA-ON,,2020-05-07,-49,-14,-1,-65,-59,24
+CA,Canada,Ontario,,,CA-ON,,2020-05-08,-51,-16,-21,-65,-58,25
+CA,Canada,Ontario,,,CA-ON,,2020-05-09,-50,-14,-32,-59,-36,14
+CA,Canada,Ontario,,,CA-ON,,2020-05-10,-43,-16,-10,-57,-32,11
+CA,Canada,Ontario,,,CA-ON,,2020-05-11,-49,-22,-16,-66,-58,23
+CA,Canada,Ontario,,,CA-ON,,2020-05-12,-46,-14,0,-63,-56,22
+CA,Canada,Ontario,,,CA-ON,,2020-05-13,-42,-12,35,-60,-56,22
+CA,Canada,Ontario,,,CA-ON,,2020-05-14,-45,-15,-12,-64,-57,24
+CA,Canada,Ontario,,,CA-ON,,2020-05-15,-46,-15,-4,-63,-57,24
+CA,Canada,Ontario,,,CA-ON,,2020-05-16,-43,-14,92,-46,-33,10
+CA,Canada,Ontario,,,CA-ON,,2020-05-17,-40,-14,33,-56,-32,10
+CA,Canada,Ontario,,,CA-ON,,2020-05-18,-68,-56,-6,-78,-83,30
+CA,Canada,Ontario,,,CA-ON,,2020-05-19,-36,0,24,-59,-54,20
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diff --git a/data/csv/home_compositions.csv b/data/csv/home_compositions.csv
new file mode 100644
index 0000000000000000000000000000000000000000..60b1bf1ffa606d1df01028ef5180a2b15cb0cc68
--- /dev/null
+++ b/data/csv/home_compositions.csv
@@ -0,0 +1,17391 @@
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+27389,2230.7931,M,0.0,0.0,1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,82.0,0.0,0.0,0.0,0.0
diff --git a/fetch_data.sh b/fetch_data.sh
index 24f5193faea3e83f1c22116327fa4d988156999d..c013702ed6dc78416202c49fa8a25f7bdc0c1b98 100755
--- a/fetch_data.sh
+++ b/fetch_data.sh
@@ -2,3 +2,6 @@
 echo "fetching full cases data..."
 curl https://data.ontario.ca/dataset/f4112442-bdc8-45d2-be3c-12efae72fb27/resource/455fd63b-603d-4608-8216-7d8647f43350/download/conposcovidloc.csv > data/csv/COVID_ontario_data.csv
 echo "done."
+echo "fetching google distancing data..."
+curl https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv?cachebust=fbb340e43a0602e1 | { head -1; grep ",CA-ON,"; } > data/csv/distancing_data.csv
+echo "done."
\ No newline at end of file
diff --git a/src/CovidAlertVaccinationModel.jl b/src/CovidAlertVaccinationModel.jl
index befa1ceb81b243e58ff42e4f589a715374b72619..a569ba2823b3f5fc48b1410775d87b298c821421 100644
--- a/src/CovidAlertVaccinationModel.jl
+++ b/src/CovidAlertVaccinationModel.jl
@@ -8,6 +8,7 @@ using Plots
 using DataFrames
 using Distributions
 using StatsBase
+import StatsBase:mean
 using Dates
 using ThreadsX
 using DelimitedFiles
@@ -28,12 +29,14 @@ include("graphs.jl")
 const population = 14.57e6 #population of ontario
 
 const color_palette = palette(:seaborn_bright) #color theme for the plots
-const age_bins = [(0.0, 20.0),(20.0,60.0),(60.0,Inf)] 
+const age_bins = [(0.0, 25.0),(25.0,65.0),(65.0,Inf)] 
 const PACKAGE_FOLDER = dirname(dirname(pathof(CovidAlertVaccinationModel)))
 const infection_data = parse_cases_data()
 const demographic_distribution = get_canada_demographic_distribution()
 
-
+#shift distribution,shift means, geometric changes to poisson if mean goes below 1
+#ZW expectation is (1 - α)(expecation of base distribution)
+#expectation/(1 - α) 
 
 
 # CUDA.allowscalar(false)
@@ -42,26 +45,16 @@ default(framestyle = :box)
 
 using BenchmarkTools
 function main()
-    vaccination_rate_test(5000,0.1,vaccinate_uniformly!)
     rng = Xoroshiro128Plus()
-    agent_model = AgentModel(rng,50,2)
-    u_0 = get_u_0(rng,length(agent_model.demographics))
-    steps = 10
-    sol1,graphs = solve!(rng,u_0,get_parameters(),steps,agent_model,vaccinate_uniformly!);
-    plot_model(agent_model.base_network,graphs,sol1)
-
-    # @btime solve!($u_0,$base_network,$params,$steps,$r,$pop_list,$index_vectors,vaccinate_uniformly!);
-
-end
-#returns the total infected given a certain num_households, vaccines per day, and strategy
-function vaccination_rate_test(num_households,vac_per_day,vac_strategy; rng = Xoroshiro128Plus()) 
-    agent_model = AgentModel(rng,num_households,2)
+    agent_model = AgentModel(rng,500,2)
     u_0 = get_u_0(rng,length(agent_model.demographics))
-    params = merge(get_parameters(),(vaccines_per_day = vac_per_day,))
     steps = 300
-    sol1,graphs = solve!(rng,u_0,params,steps,agent_model,vaccinate_uniformly!);
-    total_infections = count(x->x == Recovered,sol1[end])
+    # sol1,graphs = solve!(rng,u_0,get_parameters(),steps,agent_model,vaccinate_uniformly!);
+    # plot_model(agent_model.base_network,graphs,sol1)
+    # @btime solve!($rng,$u_0,$get_parameters(),$steps,$agent_model,$vaccinate_uniformly!);
 end
+#returns the total infected given a certain num_households, vaccines per day, and strategy
+
 
 
 end
\ No newline at end of file
diff --git a/src/agents.jl b/src/agents.jl
index c50a19fc022b3111bc3ad93f2d34767927008f94..9c5dd7e60211b7bfbe1a7904afa4fe1d1f44331b 100644
--- a/src/agents.jl
+++ b/src/agents.jl
@@ -15,21 +15,21 @@ end
 end
 
 
-struct AgentModel{GraphType}
+struct AgentModel{GraphType,DistMatrix1,DistMatrix2}
     demographics::Vector{AgentDemographic}
     demographic_index_vectors::Vector{Vector{Int}}
     base_network::GraphType
+    workschool_contacts_mean_adjusted::DistMatrix1
+    rest_contacts_mean_adjusted::DistMatrix2
     function AgentModel(rng,num_households,num_ltc)
         pop_list,base_network,index_vectors = generate_population(rng,num_households,num_ltc)
-        return new{typeof(base_network)}(pop_list,index_vectors,base_network)
+        workschool_contacts_mean_adjusted = symmetrize_means(length.(index_vectors),initial_workschool_mixing_matrix)
+        rest_contacts_mean_adjusted = symmetrize_means(length.(index_vectors),initial_rest_mixing_matrix)
+        return new{typeof(base_network),typeof(workschool_contacts_mean_adjusted),typeof(rest_contacts_mean_adjusted)}(pop_list,index_vectors,base_network,workschool_contacts_mean_adjusted,rest_contacts_mean_adjusted)
     end
 end
 
-
-
-
-
-
+# func(a) = println("agent")
 function Base.show(io::IO, status::AgentStatus) 
     if status == Susceptible
         print(io, "S")
diff --git a/src/data.jl b/src/data.jl
index f1a0132c76ce0bac181a435e8abc1f3d61e12de6..0f2f7093507a6734fc769e62b5da4ab28705bd50 100644
--- a/src/data.jl
+++ b/src/data.jl
@@ -8,7 +8,7 @@ function get_canada_demographic_distribution()::Vector{Float64}
     df = DataFrame([f[1,i] => f[2:end, i] for i = 1:length(f[1,:])])
     binned_data = df[:,:demographic_data]
     source_bins = map(parse_string_as_float_pair, df[:,:demographic_data_bins])
-    return [sum(binned_data[1:4]),sum(binned_data[5:12]),sum(binned_data[13:end])]
+    return [sum(binned_data[1:5]),sum(binned_data[6:13]),sum(binned_data[14:end])]
 end
 
 
@@ -18,6 +18,31 @@ function get_canada_case_fatality()::Tuple{Vector{Tuple{Float64,Float64}},Vector
     return  map(parse_string_as_float_pair, df[:,:case_fatality_bins]), df[:,:case_fatality_data]
     # https://www.publichealthontario.ca/-/media/documents/ncov/epi/covid-19-severe-outcomes-ontario-epi-summary.pdf?la=en
 end
+function find_household_composition(df_row)
+    age_resp_to_bin = Dict(
+        "M" => 2,
+        "O" => 3,
+        "Y" => 1
+    )
+    u25_bins = [:U15CHILD,:O15CHILD,:YSPOUSE]
+    m_bins = [:MPAR, :MCHILD,:MHHADULT]
+    o_bins = [:OPAR, :OSPOUSE,:OHHADULT]
+    age_distribution = [0,0,0]
+    age_distribution[1] += sum(df_row[field ] for field in u25_bins)
+    age_distribution[2] += sum(df_row[field]  for field in m_bins)
+    age_distribution[3] += sum(df_row[field] for field in o_bins)
+        
+    age_distribution[age_resp_to_bin[df_row[:AGERESP]]] += 1
+    return age_distribution
+end
+function sample_household_data(rng,n)
+    f = readdlm(joinpath(PACKAGE_FOLDER,"data/csv/home_compositions.csv"), ',')
+    df = DataFrame([f[1,i] => f[2:end, i] for i = 1:length(f[1,:])])
+    weight_vector::Vector{Float64} = df[!,:WGHT_PER]/sum(df[!,:WGHT_PER])
+    households = map(find_household_composition,eachrow(df))
+    return sample(rng,households, Weights(weight_vector),n)
+    # https://www.publichealthontario.ca/-/media/documents/ncov/epi/covid-19-severe-outcomes-ontario-epi-summary.pdf?la=en
+end
 
 function parse_string_as_float_pair(s)::Tuple{Float64,Float64}
     parsed = strip(s, ['(',')']) |> s -> split(s, ",")
diff --git a/src/graphs.jl b/src/graphs.jl
index a17f18d9c5d1690dc94e543e79058abc872ae90c..26e5de177f9c22a9d34295a71da4bcd9fe6679b3 100644
--- a/src/graphs.jl
+++ b/src/graphs.jl
@@ -1,29 +1,21 @@
 
 #add a bipartite graph derived from mixing matrices onto g
-#is there a better way to do this?
 function generate_mixing_graph!(rng,g,index_vectors,mixing_matrix)
     for i in 1:5, j in 1:i #diagonal
-            agent_contact_dist = mixing_matrix[i,j]
-            i_to_j_contacts = rand(rng,agent_contact_dist,length(index_vectors[i]))
+            agent_contact_dist_i = mixing_matrix[i,j]
+            agent_contact_dist_j = mixing_matrix[j,i]
+            i_to_j_contacts = rand(rng,agent_contact_dist_i,length(index_vectors[i]))
             
-            j_to_i_contacts = rand(rng,agent_contact_dist,length(index_vectors[j]))
-            
-            equalize_degree_lists!(i_to_j_contacts,j_to_i_contacts)
+            j_to_i_contacts = rand(rng,agent_contact_dist_j,length(index_vectors[j]))
+            while sum(i_to_j_contacts) - sum(j_to_i_contacts) != 0
+                i_to_j_contacts[sample(rng,1:length(index_vectors[i]))] = rand(rng,agent_contact_dist_i)
+                j_to_i_contacts[sample(rng,1:length(index_vectors[j]))] = rand(rng,agent_contact_dist_j)
+            end
             random_bipartite_graph_fast_CL!(rng,g,index_vectors[i],index_vectors[j],i_to_j_contacts,j_to_i_contacts)
     end
     return g
 end
 
-#Remove contacts from the degree list with the larger sum uniformly at random until they are equal
-#needed to satisfy constraint that a bipartite graph exists with degree lists l1 and l2 
-function equalize_degree_lists!(l1,l2)
-    if sum(l1) > sum(l2)
-        map(i -> l1[i]-=1, sample(1:length(l1),sum(l1) - sum(l2)))
-    else
-        map(i -> l2[i]-=1, sample(1:length(l2),sum(l2) - sum(l1)))
-    end
-end
-
 #modify g so that nodes specified in anodes and bnodes are connected by a bipartite graph with expected degrees given by aseq and bseq
 #implemented from Aksoy, S. G., Kolda, T. G., & Pinar, A. (2017). Measuring and modeling bipartite graphs with community structure
 #simple algorithm, might produce parallel edges for small graphs
@@ -40,62 +32,64 @@ function random_bipartite_graph_fast_CL!(rng,g,anodes,bnodes,aseq,bseq)
     return g
 end
 
+function symmetrize_means(population_sizes,mixing_matrix::Matrix{<:ZWDist})
+    mixing_means = mean.(mixing_matrix)
+    symmetrized_mixing = similar(mixing_matrix)
+    for i in 1:length(population_sizes), j in 1:length(population_sizes)
+        symmetrized_mean = 0.5*(mixing_means[i,j] + population_sizes[j]/population_sizes[i] * mixing_means[j,i])
+        symmetrized_mixing[i,j] = from_mean(typeof(mixing_matrix[i,j]),mixing_matrix[i,j].α,symmetrized_mean)
+    end
+    return symmetrized_mixing
+end
+
+
+function symmetrize_means(population_sizes,mixing_matrix::Matrix{<:Distribution})
+    mixing_means = mean.(mixing_matrix)
+    symmetrized_mixing = similar(mixing_matrix)
+    for i in 1:length(population_sizes), j in 1:length(population_sizes)
+        symmetrized_mean = 0.5*(mixing_means[i,j] + population_sizes[j]/population_sizes[i] * mixing_means[j,i])
+       
+        symmetrized_mixing[i,j] = from_mean(typeof(mixing_matrix[i,j]),symmetrized_mean)
+    end
+    return symmetrized_mixing
+end
 
 #generate population with households distributed according to household_size_distribution
 #Assume 5% of elderly are in LTC roughly, these are divide evenly among a specific number of LTC ltc_homes
 #LTC homes and households are assumed to be complete static graphs.
 function generate_population(rng,num_households,num_LTC)
-    household_sizes = Int.(rand(rng,household_size_distribution,num_households))
-    
-    total_household_population = sum(household_sizes) 
-    
     # LTC_sizes = rand(LTC_distribution,num_LTC)
-
-    prob_adult_is_HCW = 0.01 #assume 1% of adults are HCW
+    prob_adult_is_HCW = 0.01#assume 1% of adults are HCW
     prob_elderly_in_LTC = 0.05 #5% of elderly are in LTC
-    agent_distribution_in_households = Categorical([ #find a better way to do this maybe
-        demographic_distribution[1],
-        demographic_distribution[2] * (1 - prob_adult_is_HCW),
-        demographic_distribution[2] * prob_adult_is_HCW,
-        demographic_distribution[3] * (1 - prob_elderly_in_LTC),
-        demographic_distribution[3] * prob_elderly_in_LTC
-    ])
 
-    households = Vector{Vector{AgentDemographic}}()
-    ltc_pop_list = Vector{AgentDemographic}()
+    households_composition = sample_household_data(rng,num_households)
+    households = map( l -> [fill(AgentDemographic(i),n) for (i,n) in enumerate(l)],households_composition) |>
+                    l -> reduce(vcat,l) |>
+                    l -> reduce(vcat,l)
 
-    for household_size in household_sizes
-        household = Vector{AgentDemographic}()
-        while length(household)<household_size
-            agent_sample = AgentDemographic(rand(rng,agent_distribution_in_households))
-            if agent_sample == ElderlyLTC
-                push!(ltc_pop_list,agent_sample)
-            else
-                push!(household,agent_sample)
-            end
-        end
-        push!(households,household)
-    end
-
-    ltc_pop = length(ltc_pop_list)
-    println("ltc: $ltc_pop")
-    ltc_home_size = Int(ceil(ltc_pop/num_LTC))
+    total_household_pop = sum(sum.(households_composition))
+    ltc_pop = Int(div(total_household_pop,(1 - prob_elderly_in_LTC))) - total_household_pop
+    hcw_pop = Int(ceil(prob_adult_is_HCW*total_household_pop))
+    ltc_pop_list = fill(ElderlyLTC,ltc_pop)
 
+    adults_indices = findall(x -> x == Adult, households)
+    households[sample(rng,adults_indices,hcw_pop)] .= AdultHCW
 
+    ltc_home_size = Int(ceil(ltc_pop/num_LTC))
+    @assert ltc_home_size != 0 error("must have at least one LTC resident,make problem larger")
     if ltc_home_size != 0
         ltc_homes = [ltc_pop_list[i:min(i + ltc_home_size - 1,ltc_pop)] for i = 1:ltc_home_size:ltc_pop]
     else 
         ltc_homes = Vector{Vector{AgentDemographic}}()
     end
-
     ltc_networks = map(LightGraphs.complete_graph,length.(ltc_homes))
-    household_networks = map(LightGraphs.complete_graph, household_sizes)
-    # display(household_networks)
-    population_list = vcat(vcat(households...), vcat(ltc_homes...))
+    household_networks = map(LightGraphs.complete_graph, sum.(households_composition))
+
+    population_list = vcat(reduce(vcat,households), reduce(vcat,ltc_homes))
     network = blockdiag(reduce(blockdiag,household_networks; init = SimpleGraph()), reduce(blockdiag,ltc_networks; init = SimpleGraph()))
-    # display(network)
+
     index_vectors = [findall(x -> x == AgentDemographic(i), population_list) for i in 1:AgentDemographic.size+1]
-  
+
     return (;
         population_list,
         network,
diff --git a/src/mixing_distributions.jl b/src/mixing_distributions.jl
index 8b35770abd5aa9fc9baef4679d58e0e459c7d8a8..b5d921de79ae2b99e7590d8617f706a88cfc3746 100644
--- a/src/mixing_distributions.jl
+++ b/src/mixing_distributions.jl
@@ -10,6 +10,24 @@ function Base.rand(rng::AbstractRNG, s::ZWDist)
         return Base.rand(rng,s.base_dist)
     end
 end
+
+# function from_mean(::Type{Geometric{T}},μ) where T
+#     return Geometric(1/μ)
+# end
+function from_mean(::Type{Geometric{T}},μ) where T
+    if μ > 1.0
+        return Geometric(1/(μ+1))
+    else 
+        return Poisson(μ)
+    end
+end
+function from_mean(::Type{Poisson{T}},μ) where T
+    return Poisson(μ)
+end
+function from_mean(::Type{ZWDist{DistType,T}},α,μ) where {DistType <: Distribution{Univariate,W} where W, T}
+    return ZWDist(α,from_mean(DistType,μ/(1-α)))
+end
+
 function ZeroPoisson(α,λ)
     return ZWDist(α,Poisson(λ))
 end
@@ -17,37 +35,25 @@ function ZeroGeometric(α,p)
     return ZWDist(α,Geometric(p))
 end
 
+StatsBase.mean(d::ZWDist{Dist,T}) where {Dist,T} = (1 - d.α)*StatsBase.mean(d.base_dist)
 
-#constant for now anyway..
-
-const home_mixing_matrix = [
-    Poisson(1.749) Poisson(2.629) Poisson(0.648) Poisson(2.629) Poisson(0.648)
-    Poisson(0.726) Poisson(1.909) Poisson(0.357) Poisson(1.909) Poisson(0.357)
-    Poisson(0.022) Poisson(0.120) Poisson(0.677) Poisson(0.120) Poisson(0.677)
-    Poisson(0.726) Poisson(1.909) Poisson(0.357) Poisson(1.909) Poisson(0.357)
-    Poisson(0.022) Poisson(0.120) Poisson(0.677) Poisson(0.120) Poisson(0.677)
-]
-
-
-const workschool_mixing_matrix = [
-    ZeroGeometric(0.439,0.126) ZeroGeometric(0.414,0.230) ZeroPoisson(0.907,0.243) ZeroGeometric(0.414,0.230) ZeroPoisson(0.907,0.243)
-    ZeroGeometric(0.767,0.457) ZeroGeometric(0.786,0.106) ZeroPoisson(0.842,0.122) ZeroGeometric(0.786,0.106) ZeroPoisson(0.842,0.122)
-    ZeroPoisson(0.898,0.015)   ZeroPoisson(0.786,0.036)   ZeroPoisson(0.941,0.373) ZeroPoisson(0.786,0.036)   ZeroPoisson(0.941,0.373)
-    ZeroGeometric(0.767,0.457) ZeroGeometric(0.786,0.106) ZeroPoisson(0.842,0.122) ZeroGeometric(0.786,0.106) ZeroPoisson(0.842,0.122)
-    ZeroPoisson(0.898,0.015)   ZeroPoisson(0.786,0.036)   ZeroPoisson(0.941,0.373) ZeroPoisson(0.786,0.036)   ZeroPoisson(0.941,0.373)
-]
-
+const initial_workschool_mixing_matrix = map(t->from_mean(t...),[
+    (ZWDist{Geometric{Float64},Float64}, 0.433835,4.104848) (ZWDist{Geometric{Float64},Float64},0.406326,2.568782) (ZWDist{Poisson{Float64},Float64},0.888015,0.017729) (ZWDist{Geometric{Float64},Float64},0.406326,2.568782) (ZWDist{Poisson{Float64},Float64},0.888015,0.017729)
+    (ZWDist{Geometric{Float64},Float64}, 0.600966,0.975688) (ZWDist{Geometric{Float64},Float64},0.4306,5.057572) (ZWDist{Poisson{Float64},Float64}, 0.84513,0.021307) (ZWDist{Geometric{Float64},Float64},0.4306,5.057572) (ZWDist{Poisson{Float64},Float64}, 0.84513,0.021307)
+    (ZWDist{Poisson{Float64},Float64},0.887392,0.001937)   (ZWDist{Poisson{Float64},Float64},0.793004,0.00722)   (ZWDist{Poisson{Float64},Float64},0.940473, 0.022134) (ZWDist{Poisson{Float64},Float64},0.793004,0.00722)   (ZWDist{Poisson{Float64},Float64},0.940473, 0.022134)
+    (ZWDist{Geometric{Float64},Float64}, 0.600966,0.975688) (ZWDist{Geometric{Float64},Float64},0.4306,5.057572) (ZWDist{Poisson{Float64},Float64}, 0.84513,0.021307) (ZWDist{Geometric{Float64},Float64},0.4306,5.057572) (ZWDist{Poisson{Float64},Float64}, 0.84513,0.021307)
+    (ZWDist{Poisson{Float64},Float64},0.887392,0.001937)   (ZWDist{Poisson{Float64},Float64},0.793004,0.00722)   (ZWDist{Poisson{Float64},Float64},0.940473, 0.022134) (ZWDist{Poisson{Float64},Float64},0.793004,0.00722)   (ZWDist{Poisson{Float64},Float64},0.940473, 0.022134)
+])
 
 
-const rest_mixing_matrix = [
-    Geometric(0.450) Geometric(0.784)  Poisson(0.155)  Geometric(0.784)  Poisson(0.155)
-    Poisson(0.850)  Geometric(0.269)  Poisson(0.741)  Geometric(0.269)  Poisson(0.741)
-    Poisson(0.217)    Poisson(0.783)    Poisson(0.667)  Poisson(0.783)    Poisson(0.667)
-    Poisson(0.850)    Geometric(0.269)  Poisson(0.741)  Geometric(0.269)  Poisson(0.741)
-    Poisson(0.217)    Poisson(0.783)    Poisson(0.667)  Poisson(0.783)    Poisson(0.667)
-]
+const initial_rest_mixing_matrix = map(t->from_mean(t...),[
+    (Geometric{Float64},2.728177)  (Geometric{Float64},1.382557)        (Poisson{Float64},0.206362)    (Geometric{Float64},1.382557)        (Poisson{Float64},0.206362) 
+    (Poisson{Float64},1.139072)    (Geometric{Float64},3.245594)        (Poisson{Float64},0.785297)    (Geometric{Float64},3.245594)        (Poisson{Float64},0.785297)   
+    (Poisson{Float64},0.264822)    (Poisson{Float64},0.734856)          (Poisson{Float64},0.667099)    (Poisson{Float64},0.734856)          (Poisson{Float64},0.667099)  
+    (Poisson{Float64},1.139072)    (Geometric{Float64},3.245594)        (Poisson{Float64},0.785297)    (Geometric{Float64},3.245594)        (Poisson{Float64},0.785297)   
+    (Poisson{Float64},0.264822)    (Poisson{Float64},0.734856)          (Poisson{Float64},0.667099)    (Poisson{Float64},0.734856)          (Poisson{Float64},0.667099)  
+])
 
 const contact_time_distribution_matrix = [Hypergeometric(5,2,4) for i in 1:AgentDemographic.size + 1, j in 1:AgentDemographic.size + 1]
-const household_size_distribution = Truncated(Poisson(2.60),0,Inf) #https://www.researchgate.net/publication/226081704_Household_size_and_the_Poisson_distribution
 
 
diff --git a/src/model.jl b/src/model.jl
index a467b821f8aff5776816efb7f7ed25c94165c445..2b063d7a3cf09997493a210e74db2762f54ab2d4 100644
--- a/src/model.jl
+++ b/src/model.jl
@@ -1,6 +1,6 @@
 function get_u_0(rng,nodes)
     u_0 = fill(Susceptible,nodes)
-    init_indices = rand(rng, 1:nodes, 20)
+    init_indices = rand(rng, 1:nodes, 5)
     u_0[init_indices] .= Infected #start with two infected
     return u_0
 end
@@ -25,11 +25,9 @@ function agents_step!(rand_gen,t,u_next,u,population_list,graph,params,index_vec
     if t >= vaccination_start_day
         vaccination_algorithm!(rand_gen,Int(floor(vaccines_per_day*length(u))),u_next,u,graph,population_list,index_vectors) 
     end
-
     for i in 1:length(u)
         agent_status = u[i]
-        agent_demo = population_list[i]    
-
+        agent_demo = population_list[i]
         if agent_status == Susceptible
             for j in LightGraphs.neighbors(graph,i)
                 if u[j] == Infected && rand(rand_gen) < contact_weight(rand_gen,p, agent_demo,population_list[j])
@@ -51,12 +49,11 @@ function solve!(rng,u_0,params,steps,agent_model,vaccination_algorithm!)
     population_list = agent_model.demographics #list of demographic status for each agent
     index_vectors = agent_model.demographic_index_vectors #lists of indices of each agent with a given demographic 
     base_network = agent_model.base_network #static network, households and LTC homes
-
     graphs = [base_network]
     for t in 1:steps
         graph_t = deepcopy(base_network) #copy static network to modify with dynamic workschool/rest contacts
-        generate_mixing_graph!(rng,graph_t,index_vectors,workschool_mixing_matrix) #add workschool contacts
-        generate_mixing_graph!(rng,graph_t,index_vectors,rest_mixing_matrix) #add rest contacts
+        generate_mixing_graph!(rng,graph_t,index_vectors,agent_model.workschool_contacts_mean_adjusted) #add workschool contacts
+        generate_mixing_graph!(rng,graph_t,index_vectors,agent_model.rest_contacts_mean_adjusted) #add rest contacts
         push!(graphs,graph_t) #add the generated graph for this timestep onto the list of graphs 
         agents_step!(rng,t,solution[t+1],solution[t],population_list,graph_t,params,index_vectors,vaccination_algorithm!) 
         #advance agent states based on the new network, vaccination process given by vaccination_algorithm!, which is just a function defined as above
diff --git a/test/runtests.jl b/test/runtests.jl
index fadd3a9a50847a9ed52fa5672dd508e4c4ab3853..c807f9861922c47792c11059320fcadaf548468d 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -1,12 +1,66 @@
-using CovidAlertVaccinationModel
+using CovidAlertVaccinationModel:AgentModel,AgentDemographic,mean,vaccinate_uniformly!,AgentStatus,get_u_0,get_parameters,solve!
+using RandomNumbers.Xorshifts
 using Test
+using ThreadsX
+import StatsBase.mean
+rng = Xoroshiro128Plus(1)
+model_sizes = [(100,1),(1000,3),(5000,3),(5000,50)]
+vaccination_stratgies = [vaccinate_uniformly!]
+vaccination_rates = [0.0001,0.001,0.005,0.01,0.05]
+infection_rates = [0.01,0.05,0.1]
+agent_models = ThreadsX.map(model_size -> AgentModel(rng,model_size...), model_sizes)
+dem_cat = AgentDemographic.size + 1
 
 
 
+@testset "mixing matrices, size: $sz" for (m,sz) in zip(agent_models,model_sizes)
+    ws_dist = m.workschool_contacts_mean_adjusted
+    r_dist = m.rest_contacts_mean_adjusted
+    index_vec =m.demographic_index_vectors
+    @testset "workschool" for i in dem_cat, j in dem_cat
+        @test mean(ws_dist[i,j])*length(index_vec[i]) == mean(ws_dist[j,i])*length(index_vec[j])
+     end
+     @testset "rest" for i in dem_cat, j in dem_cat
+        @test mean(r_dist[i,j])*length(index_vec[i]) == mean(r_dist[j,i])*length(index_vec[j])
+    end
+end
+
+
+function vac_rate_test(model,vac_strategy, vac_rate; rng = Xoroshiro128Plus()) 
+    u_0 = get_u_0(rng,length(model.demographics))
+    params = merge(get_parameters(),(vaccines_per_day = vac_rate,))
+    steps = 300
+    sol1,graphs = solve!(rng,u_0,params,steps,model,vac_strategy);
+    total_infections = count(x->x == AgentStatus(3),sol1[end])
+    display((vac_rate,total_infections))
+    return total_infections
+end
+
 
+function infection_rate_test(model, inf_parameter; rng = Xoroshiro128Plus()) 
+    u_0 = get_u_0(rng,length(model.demographics))
+    params = merge(get_parameters(),(p = inf_parameter,))
+    steps = 300
+    sol1,graphs = solve!(rng,u_0,params,steps,model,vaccinate_uniformly!);
+    total_infections = count(x->x == AgentStatus(3),sol1[end])
 
+    display((inf_parameter,total_infections))
+    return total_infections
+end
 
+function test_comparison(f,xpts,comparison)
+    xpts_sorted = sort(xpts)
+    ypts = ThreadsX.map(f,xpts)
+    return all(comparison(ypts[i],ypts[i+1]) for i in 1:length(ypts)-1)
+end
 
-@testset "CovidAlertVaccinationModel.jl" begin
-    # Write your tests here.
+@testset "vaccination efficacy $sz" for (m,sz) in zip(deepcopy(agent_models),model_sizes)
+    @testset "strategy" for strat in vaccination_stratgies
+        @test test_comparison(x->vac_rate_test(m,strat,x),vaccination_rates,>=)
+    end
 end
+
+@testset "infection efficacy $sz" for (m,sz) in zip(deepcopy(agent_models),model_sizes)
+    @test test_comparison(x->infection_rate_test(m,x),infection_rates,<=)
+end
+