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diff --git a/CovidAlertVaccinationModel/src/ABM/parameter_planes.jl b/CovidAlertVaccinationModel/src/ABM/parameter_planes.jl
index a5179ba86fe13ea4753a363ab12954c82aa2d44b..a17c05f02cc534b1495e827978bb3b839b601ef4 100644
--- a/CovidAlertVaccinationModel/src/ABM/parameter_planes.jl
+++ b/CovidAlertVaccinationModel/src/ABM/parameter_planes.jl
@@ -1,5 +1,5 @@
-const samples = 50
+const samples = 25
const univariate_path = "CovidAlertVaccinationModel/plots/univariate/"
const bivariate_path = "CovidAlertVaccinationModel/plots/univariate/"
function univarate_test(variable, variable_range; progmeter = nothing)
@@ -31,8 +31,8 @@ function univariate_simulations()
# (:γ, range(0.0, 0.5; length = len)),
# (:ξ, range(1, 15; length = len)),
(:notification_parameter, range(0.000, 0.001; length = len)),
- # (:app_user_fraction, range(0.05, 0.8; length = len)),
- # (:notification_threshold, (1:len)),
+ (:app_user_fraction, range(0.05, 0.8; length = len)),
+ (:notification_threshold, (1:len)),
# (:immunization_delay, [7,10,14,20]),
)
@@ -43,10 +43,16 @@ function univariate_simulations()
display(get_app_parameters())
plt_list = ThreadsX.map(univarate_test_list) do ur
out = univarate_test(ur...;progmeter)
+ display(out)
return out
end
- for ((varname,_),p) in zip(univarate_test_list,plt_list)
- savefig(p,"$univariate_path/$varname.pdf")
+
+ for ((varname,_),pltlist) in zip(univarate_test_list,plt_list)
+ mkpath("$univariate_path/$varname")
+ display(pltlist)
+ for (i,p) in enumerate(pltlist)
+ savefig(p,"$univariate_path/$varname/$i.pdf")
+ end
end
end
@@ -111,7 +117,7 @@ function plot_parameter_plane(input_fname)
fnames = ["wdg_change.pdf", "final_size_change.pdf"]
titles = [
"Average w. deg. of vaccinators minus average w. deg.",
- "Change in average final size of infection outbreak",
+ "Effect of notifications on tot. infections",
]
for (fname,title,datamap) in zip(fnames,titles,datamaps)
p = heatmap(var_ranges[1],var_ranges[2],datamap; title, xlabel = vars[1], ylabel = vars[2], seriescolor=cs, size = (600,400))
diff --git a/CovidAlertVaccinationModel/src/ABM/plotting.jl b/CovidAlertVaccinationModel/src/ABM/plotting.jl
index 1f5870a771c168fe55579cee8710dc74f21a8616..96488a5b2ad37322f9cb4b85ad48bd89a32699b7 100644
--- a/CovidAlertVaccinationModel/src/ABM/plotting.jl
+++ b/CovidAlertVaccinationModel/src/ABM/plotting.jl
@@ -6,7 +6,7 @@ using Printf
const ts_colors = cgrad(:PuBu_9)
function plot_model(varname,univariate_series, output_list::Vector{T},infection_begin,vac_begin) where T<:DebugRecorder
-
+
sim_length = length(output_list[1].recorded_status_totals.S)
ts_list(data) = [
(data.recorded_status_totals.S, "Susceptible over time"),
@@ -24,7 +24,7 @@ function plot_model(varname,univariate_series, output_list::Vector{T},infection_
]
l = length(ts_list(output_list[1]))
- plts = [plot() for i=1:l]
+ plts = [plot() for i in 1:l]
for (i,(p,data)) in enumerate(zip(univariate_series, output_list))
# display(p[varname])
if !isnothing(varname)
@@ -34,18 +34,21 @@ function plot_model(varname,univariate_series, output_list::Vector{T},infection_
labelname = nothing
end
for (plt,(ts,title)) in zip(plts,ts_list(data))
- plot!(plt, mean.(ts); #yerr = std.(ts),
+ p = plot!(plt,mean.(ts)[vac_begin+25:end]; #yerr = std.(ts),
label = labelname, line_z = i, color=:blues,
ylabel = "no. of people",
colorbar = false,
title = title,
+ legends = :outerright,
+ xlabel = "time (days)",
)
end
end
- plot!(plts[begin]; legends = :topright)
+ # plot!(plts[begin]; )
for p in plts
- vline!(p,[infection_begin]; label = "infection begin", line =:dot)
- vline!(p,[vac_begin]; label = "vaccination begin",line = :dot)
+ vline!(p,[infection_begin-(vac_begin+25)]; label = "infection begin", line =:dot)
+ # vline!(p,[vac_begin]; label = "vaccination begin",line = :dot)
end
- return plot(plts...;layout = (l,1),size=(800,400*l),leftmargin = 12Plots.mm, legend = :outerright)
+ # return plot(plts...;layout = (l,1),size=(800,400*l),leftmargin = 12Plots.mm, legend = :outerright)
+ return plts
end
diff --git a/CovidAlertVaccinationModel/src/ABM/solve.jl b/CovidAlertVaccinationModel/src/ABM/solve.jl
index cf53ea0297a11090a0ab9db9d85213b4f4594750..52ef348ed8afbb492f8d2263c73a7a777190e929 100644
--- a/CovidAlertVaccinationModel/src/ABM/solve.jl
+++ b/CovidAlertVaccinationModel/src/ABM/solve.jl
@@ -111,6 +111,7 @@ Base.@propagate_inbounds @views function update_vaccination_opinion_state!(t,mod
@unpack demographics,time_of_last_alert, nodes, soc_network,u_vac,u_next_vac,app_user,app_user_list = modelsol
modelsol.daily_total_notified_agents = 0
+ # display(time_of_last_alert[1:20])
for i in 1:nodes
Ï€_base = t<infection_introduction_day ?
(Ï€_base_y,Ï€_base_m,Ï€_base_o) :