Commit 2ce4277d authored by Peter Jentsch's avatar Peter Jentsch
Browse files

basic tests

parent 688f2ea5
......@@ -15,10 +15,10 @@ version = "2.1.0"
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
[[ArnoldiMethod]]
deps = ["DelimitedFiles", "LinearAlgebra", "Random", "SparseArrays", "Test"]
git-tree-sha1 = "a5f9581eaf9371fe12b4a0b12c05690b45912e71"
deps = ["LinearAlgebra", "Random", "StaticArrays"]
git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
version = "0.0.2"
version = "0.1.0"
[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
......@@ -58,9 +58,9 @@ version = "0.9.0"
[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "89a0b14325d0f02f9caed7c8ba91181a5d254874"
git-tree-sha1 = "53fed426c9af1eb68e63b3999e96454c2db79757"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "0.9.26"
version = "0.9.27"
[[ColorSchemes]]
deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
......@@ -112,15 +112,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.0.4"
[[DataAPI]]
git-tree-sha1 = "ad84f52c0b8f05aa20839484dbaf01690b41ff84"
git-tree-sha1 = "25ccd31003243d2ce83e474cf11663dddf48035f"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.4.0"
version = "1.4.1"
[[DataFrames]]
deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "b46e1deb4592a5df7416b10dfcd6b01fb194ab9a"
git-tree-sha1 = "c5f9f2385a52e35c75efd90911091f8a749177a5"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "0.22.2"
version = "0.22.4"
[[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
......@@ -152,9 +152,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[Distributions]]
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
git-tree-sha1 = "5c6a645ea65af6aac4f96b5dedaae660b7b56267"
git-tree-sha1 = "f0e06a5b5ccda38e2fb8f59d91316e657b67047d"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.24.10"
version = "0.24.12"
[[Downloads]]
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
......@@ -186,9 +186,9 @@ version = "4.3.1+4"
[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays"]
git-tree-sha1 = "ff537e5a3cba92fb48f30fec46723510450f2c0e"
git-tree-sha1 = "50eabdace27aa27b143f65b65e762bb0112a7708"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.10.2"
version = "0.11.1"
[[FixedPointNumbers]]
deps = ["Statistics"]
......@@ -244,9 +244,9 @@ version = "0.53.0+0"
[[GeometryBasics]]
deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
git-tree-sha1 = "876f77f0d3253e882ff588af1c95d0e4a86c9766"
git-tree-sha1 = "f574945bcabe9805b78292216279c1be910168bb"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.3.5"
version = "0.3.8"
[[Gettext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
......@@ -271,6 +271,12 @@ git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "0.8.19"
[[ImportAll]]
deps = ["Test"]
git-tree-sha1 = "5aa65f6204e1b68dfef024421e61fbcacecfbfa6"
uuid = "c65182e5-40f4-518f-8165-175b85689199"
version = "1.1.0"
[[Inflate]]
git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c"
uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
......@@ -422,9 +428,9 @@ version = "2.34.0+7"
[[LightGraphs]]
deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
git-tree-sha1 = "677464beb4a91772d151ee62ea5e181d4b7f50ec"
git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6"
uuid = "093fc24a-ae57-5d10-9952-331d41423f4d"
version = "1.3.4"
version = "1.3.5"
[[LinearAlgebra]]
deps = ["Libdl"]
......@@ -466,9 +472,9 @@ version = "0.1.0"
[[Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "ed61674a0864832495ffe0a7e889c0da76b0f4c8"
git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "0.4.4"
version = "0.4.5"
[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
......@@ -571,9 +577,9 @@ version = "1.0.10"
[[Plots]]
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "4797acb266b8d9ff316f4581924e71c6709f152d"
git-tree-sha1 = "3acf7ee21b0c0ea99ef0815e7768c1c0fde82629"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.10.1"
version = "1.10.2"
[[PooledArrays]]
deps = ["DataAPI"]
......@@ -583,9 +589,9 @@ version = "0.5.3"
[[PrettyTables]]
deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"]
git-tree-sha1 = "237170206bf38a66fee4d845f4ae57f63788eeb0"
git-tree-sha1 = "42126c4e2677cdc664baea004c98cc60a664fe40"
uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
version = "0.10.1"
version = "0.11.0"
[[Printf]]
deps = ["Unicode"]
......@@ -629,10 +635,9 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c"
version = "0.2.1"
[[Reexport]]
deps = ["Pkg"]
git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "0.2.0"
version = "1.0.0"
[[Referenceables]]
git-tree-sha1 = "4a32b1dd124a846580608eb347d4337f873c2499"
......@@ -712,9 +717,9 @@ version = "1.2.1"
[[SplittablesBase]]
deps = ["Setfield", "Test"]
git-tree-sha1 = "e6e5e266aa58c2e419d19e8eccbe6af55d5dc6e1"
git-tree-sha1 = "c2b4f3cd29827787a5f61afe12ea13222197ab98"
uuid = "171d559e-b47b-412a-8079-5efa626c420e"
version = "0.1.11"
version = "0.1.12"
[[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
......@@ -746,9 +751,9 @@ version = "0.4.4"
[[StructTypes]]
deps = ["Dates", "UUIDs"]
git-tree-sha1 = "d94235fcdc4a09649f263365c5f7e4ed4ba6ed34"
git-tree-sha1 = "65a43f5218197bc7091b76bc273a5e323a1d7b0d"
uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
version = "1.2.1"
version = "1.2.3"
[[SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
......@@ -766,9 +771,9 @@ version = "1.0.0"
[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "240d19b8762006ff04b967bdd833269ad642d550"
git-tree-sha1 = "8dc2bb7d3548e315d890706547b24502ed79504f"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.2.2"
version = "1.3.1"
[[Tar]]
deps = ["ArgTools", "SHA"]
......@@ -786,9 +791,9 @@ version = "0.1.7"
[[Transducers]]
deps = ["ArgCheck", "BangBang", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
git-tree-sha1 = "eb5d4ff48c25762319f1aae0e5b501394beaefd7"
git-tree-sha1 = "02413f5795ad272f9f9912e4e4c83d9b1572750c"
uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999"
version = "0.4.56"
version = "0.4.58"
[[UUIDs]]
deps = ["Random", "SHA"]
......@@ -958,9 +963,9 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
[[Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6f1abcb0c44f184690912aa4b0ba861dd64f11b9"
git-tree-sha1 = "2c1332c54931e83f8f94d310fa447fd743e8d600"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.4.5+2"
version = "1.4.8+0"
[[ZygoteRules]]
deps = ["MacroTools"]
......
......@@ -9,6 +9,7 @@ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
ImportAll = "c65182e5-40f4-518f-8165-175b85689199"
LightGraphs = "093fc24a-ae57-5d10-9952-331d41423f4d"
NamedTupleTools = "d9ec5142-1e00-5aa0-9d6a-321866360f50"
NetworkLayout = "46757867-2c16-5918-afeb-47bfcb05e46a"
......
{
"folders": [
{
"name": "CovidAlertVaccinationModel",
"path": "."
}
],
"settings": {}
}
\ No newline at end of file
This source diff could not be displayed because it is too large. You can view the blob instead.
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CA,Canada,Ontario,,,CA-ON,,2020-06-07,-28,-10,143,-43,-14,6
CA,Canada,Ontario,,,CA-ON,,2020-06-08,-29,-6,98,-54,-48,16
CA,Canada,Ontario,,,CA-ON,,2020-06-09,-31,-5,88,-54,-47,17
CA,Canada,Ontario,,,CA-ON,,2020-06-10,-30,-6,45,-56,-48,18
CA,Canada,Ontario,,,CA-ON,,2020-06-11,-28,-2,91,-52,-47,18
CA,Canada,Ontario,,,CA-ON,,2020-06-12,-31,-6,88,-52,-46,17
CA,Canada,Ontario,,,CA-ON,,2020-06-13,-29,-6,139,-36,-9,7
CA,Canada,Ontario,,,CA-ON,,2020-06-14,-25,-9,153,-40,-9,5
CA,Canada,Ontario,,,CA-ON,,2020-06-15,-26,-4,108,-52,-47,16
CA,Canada,Ontario,,,CA-ON,,2020-06-16,-26,0,112,-51,-46,15
CA,Canada,Ontario,,,CA-ON,,2020-06-17,-26,-2,110,-51,-46,16
CA,Canada,Ontario,,,CA-ON,,2020-06-18,-25,2,121,-50,-46,16
CA,Canada,Ontario,,,CA-ON,,2020-06-19,-27,-1,117,-49,-45,14
CA,Canada,Ontario,,,CA-ON,,2020-06-20,-27,1,166,-34,-7,4
CA,Canada,Ontario,,,CA-ON,,2020-06-21,-24,-6,141,-40,-4,3
CA,Canada,Ontario,,,CA-ON,,2020-06-22,-27,-6,86,-52,-48,15
CA,Canada,Ontario,,,CA-ON,,2020-06-23,-28,-4,48,-53,-48,16
CA,Canada,Ontario,,,CA-ON,,2020-06-24,-23,0,85,-49,-46,16
CA,Canada,Ontario,,,CA-ON,,2020-06-25,-22,2,120,-47,-45,15
CA,Canada,Ontario,,,CA-ON,,2020-06-26,-26,-2,137,-46,-44,14
CA,Canada,Ontario,,,CA-ON,,2020-06-27,-27,-4,140,-32,-9,5
CA,Canada,Ontario,,,CA-ON,,2020-06-28,-22,-7,194,-33,-3,3
CA,Canada,Ontario,,,CA-ON,,2020-06-29,-18,3,140,-50,-47,13
CA,Canada,Ontario,,,CA-ON,,2020-06-30,-7,29,145,-46,-45,11
CA,Canada,Ontario,,,CA-ON,,2020-07-01,-47,-39,276,-59,-71,18
CA,Canada,Ontario,,,CA-ON,,2020-07-02,-16,11,136,-49,-49,14
CA,Canada,Ontario,,,CA-ON,,2020-07-03,-22,4,157,-49,-51,15
CA,Canada,Ontario,,,CA-ON,,2020-07-04,-25,-3,203,-34,-9,4
CA,Canada,Ontario,,,CA-ON,,2020-07-05,-20,-7,184,-36,-8,2
CA,Canada,Ontario,,,CA-ON,,2020-07-06,-19,2,135,-50,-47,14
CA,Canada,Ontario,,,CA-ON,,2020-07-07,-20,3,120,-49,-46,14
CA,Canada,Ontario,,,CA-ON,,2020-07-08,-20,1,106,-50,-46,14
CA,Canada,Ontario,,,CA-ON,,2020-07-09,-20,4,121,-49,-45,14
CA,Canada,Ontario,,,CA-ON,,2020-07-10,-25,-2,108,-49,-45,14
CA,Canada,Ontario,,,CA-ON,,2020-07-11,-26,-3,88,-38,-9,6
CA,Canada,Ontario,,,CA-ON,,2020-07-12,-18,-5,180,-35,-6,3
CA,Canada,Ontario,,,CA-ON,,2020-07-13,-19,-1,126,-50,-46,13
CA,Canada,Ontario,,,CA-ON,,2020-07-14,-19,2,142,-49,-45,13
CA,Canada,Ontario,,,CA-ON,,2020-07-15,-18,1,133,-50,-45,13
CA,Canada,Ontario,,,CA-ON,,2020-07-16,-21,2,69,-51,-45,15
CA,Canada,Ontario,,,CA-ON,,2020-07-17,-21,0,162,-47,-43,12
CA,Canada,Ontario,,,CA-ON,,2020-07-18,-22,-2,210,-32,-6,3
CA,Canada,Ontario,,,CA-ON,,2020-07-19,-23,-9,111,-40,-10,4
CA,Canada,Ontario,,,CA-ON,,2020-07-20,-17,3,154,-49,-46,12
CA,Canada,Ontario,,,CA-ON,,2020-07-21,-18,3,145,-49,-45,13
CA,Canada,Ontario,,,CA-ON,,2020-07-22,-21,-2,68,-52,-45,15
CA,Canada,Ontario,,,CA-ON,,2020-07-23,-18,4,148,-48,-44,13
CA,Canada,Ontario,,,CA-ON,,2020-07-24,-22,-1,165,-47,-43,12
CA,Canada,Ontario,,,CA-ON,,2020-07-25,-22,-3,220,-31,-5,2
CA,Canada,Ontario,,,CA-ON,,2020-07-26,-17,-6,191,-35,-6,2
CA,Canada,Ontario,,,CA-ON,,2020-07-27,-20,-1,109,-51,-47,13
CA,Canada,Ontario,,,CA-ON,,2020-07-28,-18,4,147,-49,-45,12
CA,Canada,Ontario,,,CA-ON,,2020-07-29,-16,2,125,-49,-45,13
CA,Canada,Ontario,,,CA-ON,,2020-07-30,-14,7,155,-46,-45,12
CA,Canada,Ontario,,,CA-ON,,2020-07-31,-17,4,180,-43,-45,10
CA,Canada,Ontario,,,CA-ON,,2020-08-01,-21,-3,229,-28,-9,1
CA,Canada,Ontario,,,CA-ON,,2020-08-02,-18,-6,86,-40,-14,4
CA,Canada,Ontario,,,CA-ON,,2020-08-03,-30,-23,178,-61,-74,18
CA,Canada,Ontario,,,CA-ON,,2020-08-04,-18,3,63,-50,-47,13
CA,Canada,Ontario,,,CA-ON,,2020-08-05,-13,5,148,-47,-45,12
CA,Canada,Ontario,,,CA-ON,,2020-08-06,-13,4,173,-46,-44,12
CA,Canada,Ontario,,,CA-ON,,2020-08-07,-19,-3,169,-45,-43,11
CA,Canada,Ontario,,,CA-ON,,2020-08-08,-18,-4,232,-28,-5,1
CA,Canada,Ontario,,,CA-ON,,2020-08-09,-14,-7,180,-33,-6,1
CA,Canada,Ontario,,,CA-ON,,2020-08-10,-16,-2,142,-50,-45,12
CA,Canada,Ontario,,,CA-ON,,2020-08-11,-16,1,128,-49,-44,12
CA,Canada,Ontario,,,CA-ON,,2020-08-12,-14,0,155,-48,-44,12
CA,Canada,Ontario,,,CA-ON,,2020-08-13,-14,2,164,-47,-44,12
CA,Canada,Ontario,,,CA-ON,,2020-08-14,-18,-2,165,-45,-43,10
CA,Canada,Ontario,,,CA-ON,,2020-08-15,-18,-4,225,-28,-5,1
CA,Canada,Ontario,,,CA-ON,,2020-08-16,-15,-7,127,-35,-8,2
CA,Canada,Ontario,,,CA-ON,,2020-08-17,-18,-4,107,-50,-45,12
CA,Canada,Ontario,,,CA-ON,,2020-08-18,-15,1,136,-48,-43,11
CA,Canada,Ontario,,,CA-ON,,2020-08-19,-14,-1,140,-48,-43,12
CA,Canada,Ontario,,,CA-ON,,2020-08-20,-13,3,149,-46,-43,11
CA,Canada,Ontario,,,CA-ON,,2020-08-21,-18,-3,148,-45,-42,10
CA,Canada,Ontario,,,CA-ON,,2020-08-22,-18,-4,210,-29,-4,1
CA,Canada,Ontario,,,CA-ON,,2020-08-23,-13,-7,180,-32,-5,0
CA,Canada,Ontario,,,CA-ON,,2020-08-24,-16,-3,134,-49,-44,11
CA,Canada,Ontario,,,CA-ON,,2020-08-25,-15,2,141,-47,-43,11
CA,Canada,Ontario,,,CA-ON,,2020-08-26,-16,-2,94,-48,-43,12
CA,Canada,Ontario,,,CA-ON,,2020-08-27,-14,2,114,-46,-42,12
CA,Canada,Ontario,,,CA-ON,,2020-08-28,-18,-3,122,-45,-41,11
CA,Canada,Ontario,,,CA-ON,,2020-08-29,-17,-1,132,-30,-6,2
CA,Canada,Ontario,,,CA-ON,,2020-08-30,-10,-4,193,-28,-4,0
CA,Canada,Ontario,,,CA-ON,,2020-08-31,-12,1,142,-46,-43,10
CA,Canada,Ontario,,,CA-ON,,2020-09-01,-13,3,122,-45,-43,10
CA,Canada,Ontario,,,CA-ON,,2020-09-02,-14,-1,87,-48,-43,12
CA,Canada,Ontario,,,CA-ON,,2020-09-03,-12,3,138,-44,-42,10
CA,Canada,Ontario,,,CA-ON,,2020-09-04,-13,2,142,-42,-43,9
CA,Canada,Ontario,,,CA-ON,,2020-09-05,-16,0,176,-29,-9,1
CA,Canada,Ontario,,,CA-ON,,2020-09-06,-3,2,235,-28,-8,-1
CA,Canada,Ontario,,,CA-ON,,2020-09-07,-43,-42,119,-63,-80,20
CA,Canada,Ontario,,,CA-ON,,2020-09-08,-13,11,53,-47,-44,11
CA,Canada,Ontario,,,CA-ON,,2020-09-09,-16,0,63,-48,-42,12
CA,Canada,Ontario,,,CA-ON,,2020-09-10,-14,2,85,-46,-41,11
CA,Canada,Ontario,,,CA-ON,,2020-09-11,-17,-3,111,-44,-39,10
CA,Canada,Ontario,,,CA-ON,,2020-09-12,-14,0,165,-28,-2,2
CA,Canada,Ontario,,,CA-ON,,2020-09-13,-13,-4,103,-34,-6,3
CA,Canada,Ontario,,,CA-ON,,2020-09-14,-15,-2,91,-48,-39,11
CA,Canada,Ontario,,,CA-ON,,2020-09-15,-15,0,82,-47,-38,11
CA,Canada,Ontario,,,CA-ON,,2020-09-16,-16,-4,93,-47,-39,11
CA,Canada,Ontario,,,CA-ON,,2020-09-17,-16,-1,91,-46,-39,11
CA,Canada,Ontario,,,CA-ON,,2020-09-18,-18,-5,83,-45,-37,10
CA,Canada,Ontario,,,CA-ON,,2020-09-19,-15,-1,133,-32,-3,3
CA,Canada,Ontario,,,CA-ON,,2020-09-20,-11,-3,139,-35,-3,2
CA,Canada,Ontario,,,CA-ON,,2020-09-21,-18,-4,82,-49,-40,11
CA,Canada,Ontario,,,CA-ON,,2020-09-22,-19,-1,78,-48,-39,11
CA,Canada,Ontario,,,CA-ON,,2020-09-23,-19,-2,82,-48,-38,12
CA,Canada,Ontario,,,CA-ON,,2020-09-24,-20,-1,68,-48,-38,12
CA,Canada,Ontario,,,CA-ON,,2020-09-25,-21,-4,95,-47,-36,11
CA,Canada,Ontario,,,CA-ON,,2020-09-26,-16,0,159,-34,0,2
CA,Canada,Ontario,,,CA-ON,,2020-09-27,-13,-3,143,-36,-2,2
CA,Canada,Ontario,,,CA-ON,,2020-09-28,-21,-3,65,-51,-38,12
CA,Canada,Ontario,,,CA-ON,,2020-09-29,-20,0,45,-50,-37,12
CA,Canada,Ontario,,,CA-ON,,2020-09-30,-20,-1,12,-51,-38,13
CA,Canada,Ontario,,,CA-ON,,2020-10-01,-18,3,46,-49,-36,12
CA,Canada,Ontario,,,CA-ON,,2020-10-02,-23,-4,36,-49,-35,12
CA,Canada,Ontario,,,CA-ON,,2020-10-03,-18,-1,100,-35,-3,4
CA,Canada,Ontario,,,CA-ON,,2020-10-04,-20,-5,15,-44,-8,5
CA,Canada,Ontario,,,CA-ON,,2020-10-05,-21,-1,55,-50,-38,12
CA,Canada,Ontario,,,CA-ON,,2020-10-06,-21,1,50,-50,-37,12
CA,Canada,Ontario,,,CA-ON,,2020-10-07,-22,-1,22,-52,-38,13
CA,Canada,Ontario,,,CA-ON,,2020-10-08,-20,5,46,-49,-36,12
CA,Canada,Ontario,,,CA-ON,,2020-10-09,-20,6,74,-46,-36,11
CA,Canada,Ontario,,,CA-ON,,2020-10-10,-23,4,117,-37,-5,4
CA,Canada,Ontario,,,CA-ON,,2020-10-11,-21,1,112,-42,-8,3
CA,Canada,Ontario,,,CA-ON,,2020-10-12,-58,-51,106,-70,-80,22
CA,Canada,Ontario,,,CA-ON,,2020-10-13,-23,4,56,-50,-38,12
CA,Canada,Ontario,,,CA-ON,,2020-10-14,-23,-2,50,-50,-37,13
CA,Canada,Ontario,,,CA-ON,,2020-10-15,-26,-5,-8,-53,-37,15
CA,Canada,Ontario,,,CA-ON,,2020-10-16,-23,-3,43,-49,-35,13
CA,Canada,Ontario,,,CA-ON,,2020-10-17,-19,0,109,-36,-3,5
CA,Canada,Ontario,,,CA-ON,,2020-10-18,-21,-6,44,-44,-8,6
CA,Canada,Ontario,,,CA-ON,,2020-10-19,-27,-8,-1,-55,-38,14
CA,Canada,Ontario,,,CA-ON,,2020-10-20,-23,0,32,-51,-37,13
CA,Canada,Ontario,,,CA-ON,,2020-10-21,-25,-5,15,-53,-37,14
CA,Canada,Ontario,,,CA-ON,,2020-10-22,-24,-2,17,-50,-36,14
CA,Canada,Ontario,,,CA-ON,,2020-10-23,-24,-6,75,-48,-34,12
CA,Canada,Ontario,,,CA-ON,,2020-10-24,-21,0,58,-38,-4,6
CA,Canada,Ontario,,,CA-ON,,2020-10-25,-20,-5,46,-43,-8,6
CA,Canada,Ontario,,,CA-ON,,2020-10-26,-26,-6,7,-53,-38,14
CA,Canada,Ontario,,,CA-ON,,2020-10-27,-26,-5,-6,-53,-36,13
CA,Canada,Ontario,,,CA-ON,,2020-10-28,-22,0,27,-50,-36,13
CA,Canada,Ontario,,,CA-ON,,2020-10-29,-22,0,3,-51,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-10-30,-23,-1,1,-49,-34,13
CA,Canada,Ontario,,,CA-ON,,2020-10-31,-20,4,47,-36,-3,5
CA,Canada,Ontario,,,CA-ON,,2020-11-01,-25,-8,-20,-47,-11,7
CA,Canada,Ontario,,,CA-ON,,2020-11-02,-27,-8,-12,-55,-38,14
CA,Canada,Ontario,,,CA-ON,,2020-11-03,-26,-4,-1,-53,-36,13
CA,Canada,Ontario,,,CA-ON,,2020-11-04,-25,-6,35,-52,-36,13
CA,Canada,Ontario,,,CA-ON,,2020-11-05,-24,-4,34,-51,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-11-06,-24,-6,49,-50,-34,13
CA,Canada,Ontario,,,CA-ON,,2020-11-07,-18,-2,113,-35,-2,5
CA,Canada,Ontario,,,CA-ON,,2020-11-08,-14,-4,130,-40,-5,4
CA,Canada,Ontario,,,CA-ON,,2020-11-09,-23,-6,57,-53,-36,13
CA,Canada,Ontario,,,CA-ON,,2020-11-10,-21,-1,60,-51,-35,12
CA,Canada,Ontario,,,CA-ON,,2020-11-11,-21,-3,24,-53,-39,14
CA,Canada,Ontario,,,CA-ON,,2020-11-12,-22,-2,19,-52,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-11-13,-24,-5,1,-51,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-11-14,-20,0,43,-40,-5,6
CA,Canada,Ontario,,,CA-ON,,2020-11-15,-28,-15,-33,-52,-13,8
CA,Canada,Ontario,,,CA-ON,,2020-11-16,-26,-8,-13,-56,-38,14
CA,Canada,Ontario,,,CA-ON,,2020-11-17,-27,-7,-17,-55,-36,14
CA,Canada,Ontario,,,CA-ON,,2020-11-18,-26,-8,-15,-55,-37,15
CA,Canada,Ontario,,,CA-ON,,2020-11-19,-23,-3,8,-53,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-11-20,-22,-3,30,-50,-35,14
CA,Canada,Ontario,,,CA-ON,,2020-11-21,-19,2,16,-40,-4,7
CA,Canada,Ontario,,,CA-ON,,2020-11-22,-29,-16,-29,-51,-12,8
CA,Canada,Ontario,,,CA-ON,,2020-11-23,-30,-11,-19,-58,-39,15
CA,Canada,Ontario,,,CA-ON,,2020-11-24,-29,-6,-18,-57,-37,15
CA,Canada,Ontario,,,CA-ON,,2020-11-25,-30,-11,-25,-58,-37,16
CA,Canada,Ontario,,,CA-ON,,2020-11-26,-23,-1,-7,-55,-37,15
CA,Canada,Ontario,,,CA-ON,,2020-11-27,-25,-5,-5,-53,-36,15
CA,Canada,Ontario,,,CA-ON,,2020-11-28,-22,-1,30,-43,-5,7
CA,Canada,Ontario,,,CA-ON,,2020-11-29,-21,-5,44,-48,-10,7
CA,Canada,Ontario,,,CA-ON,,2020-11-30,-28,-10,-35,-59,-38,15
CA,Canada,Ontario,,,CA-ON,,2020-12-01,-34,-12,-26,-58,-40,17
CA,Canada,Ontario,,,CA-ON,,2020-12-02,-27,-4,-14,-56,-37,15
CA,Canada,Ontario,,,CA-ON,,2020-12-03,-25,-1,-8,-55,-36,15
CA,Canada,Ontario,,,CA-ON,,2020-12-04,-30,-9,-21,-56,-35,16
CA,Canada,Ontario,,,CA-ON,,2020-12-05,-25,-1,4,-45,-6,8
CA,Canada,Ontario,,,CA-ON,,2020-12-06,-25,-7,9,-51,-12,8
CA,Canada,Ontario,,,CA-ON,,2020-12-07,-28,-7,-14,-58,-38,15
CA,Canada,Ontario,,,CA-ON,,2020-12-08,-28,-4,-12,-57,-36,14
CA,Canada,Ontario,,,CA-ON,,2020-12-09,-30,-9,-21,-57,-37,16
CA,Canada,Ontario,,,CA-ON,,2020-12-10,-25,0,-3,-55,-36,15
CA,Canada,Ontario,,,CA-ON,,2020-12-11,-25,-2,6,-54,-35,15
CA,Canada,Ontario,,,CA-ON,,2020-12-12,-29,-4,-24,-49,-8,9
CA,Canada,Ontario,,,CA-ON,,2020-12-13,-24,-5,3,-50,-11,8
CA,Canada,Ontario,,,CA-ON,,2020-12-14,-29,-5,-16,-59,-39,15
CA,Canada,Ontario,,,CA-ON,,2020-12-15,-27,-1,-18,-57,-38,15
CA,Canada,Ontario,,,CA-ON,,2020-12-16,-29,-6,-32,-59,-38,16
CA,Canada,Ontario,,,CA-ON,,2020-12-17,-25,3,-16,-56,-37,16
CA,Canada,Ontario,,,CA-ON,,2020-12-18,-27,-1,-9,-55,-36,16
CA,Canada,Ontario,,,CA-ON,,2020-12-19,-28,0,-2,-45,-8,8
CA,Canada,Ontario,,,CA-ON,,2020-12-20,-25,-4,0,-49,-11,8
CA,Canada,Ontario,,,CA-ON,,2020-12-21,-17,16,1,-57,-46,15
CA,Canada,Ontario,,,CA-ON,,2020-12-22,-14,27,-2,-56,-46,15
CA,Canada,Ontario,,,CA-ON,,2020-12-23,-10,39,4,-55,-48,15
CA,Canada,Ontario,,,CA-ON,,2020-12-24,-26,29,-20,-62,-64,21
CA,Canada,Ontario,,,CA-ON,,2020-12-25,-86,-79,-17,-83,-86,29
CA,Canada,Ontario,,,CA-ON,,2020-12-26,-65,-48,-8,-67,-44,15
CA,Canada,Ontario,,,CA-ON,,2020-12-27,-49,-28,17,-61,-27,11
CA,Canada,Ontario,,,CA-ON,,2020-12-28,-45,-15,-8,-73,-72,26
CA,Canada,Ontario,,,CA-ON,,2020-12-29,-39,-3,11,-66,-60,22
CA,Canada,Ontario,,,CA-ON,,2020-12-30,-39,1,-27,-67,-61,24
CA,Canada,Ontario,,,CA-ON,,2020-12-31,-31,19,18,-67,-65,23
CA,Canada,Ontario,,,CA-ON,,2021-01-01,-79,-74,-1,-83,-85,33
CA,Canada,Ontario,,,CA-ON,,2021-01-02,-51,-20,17,-60,-30,14
CA,Canada,Ontario,,,CA-ON,,2021-01-03,-50,-24,2,-62,-24,12
CA,Canada,Ontario,,,CA-ON,,2021-01-04,-45,-14,-14,-65,-47,19
CA,Canada,Ontario,,,CA-ON,,2021-01-05,-44,-11,-17,-64,-47,19
CA,Canada,Ontario,,,CA-ON,,2021-01-06,-46,-16,-18,-65,-47,20
CA,Canada,Ontario,,,CA-ON,,2021-01-07,-45,-12,-7,-64,-46,20
CA,Canada,Ontario,,,CA-ON,,2021-01-08,-47,-18,-15,-65,-45,21
CA,Canada,Ontario,,,CA-ON,,2021-01-09,-45,-12,32,-58,-18,12
CA,Canada,Ontario,,,CA-ON,,2021-01-10,-46,-18,15,-61,-22,11
CA,Canada,Ontario,,,CA-ON,,2021-01-11,-48,-18,-20,-66,-46,19
CA,Canada,Ontario,,,CA-ON,,2021-01-12,-47,-14,-24,-66,-46,19
CA,Canada,Ontario,,,CA-ON,,2021-01-13,-45,-11,-21,-66,-47,19
CA,Canada,Ontario,,,CA-ON,,2021-01-14,-54,-24,-22,-68,-49,21
CA,Canada,Ontario,,,CA-ON,,2021-01-15,-54,-26,-31,-69,-49,22
CA,Canada,Ontario,,,CA-ON,,2021-01-16,-54,-22,13,-64,-25,14
CA,Canada,Ontario,,,CA-ON,,2021-01-17,-53,-27,0,-66,-27,12
CA,Canada,Ontario,,,CA-ON,,2021-01-18,-53,-25,-21,-69,-50,20
CA,Canada,Ontario,,,CA-ON,,2021-01-19,-52,-22,-27,-68,-50,20
CA,Canada,Ontario,,,CA-ON,,2021-01-20,-51,-24,-33,-69,-49,21
CA,Canada,Ontario,,,CA-ON,,2021-01-21,-50,-19,-20,-67,-49,21
CA,Canada,Ontario,,,CA-ON,,2021-01-22,-51,-22,-30,-68,-48,22
CA,Canada,Ontario,,,CA-ON,,2021-01-23,-50,-17,-4,-63,-23,13
CA,Canada,Ontario,,,CA-ON,,2021-01-24,-51,-24,-1,-66,-26,12
This source diff could not be displayed because it is too large. You can view the blob instead.
......@@ -2,3 +2,6 @@
echo "fetching full cases data..."
curl https://data.ontario.ca/dataset/f4112442-bdc8-45d2-be3c-12efae72fb27/resource/455fd63b-603d-4608-8216-7d8647f43350/download/conposcovidloc.csv > data/csv/COVID_ontario_data.csv
echo "done."
echo "fetching google distancing data..."
curl https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv?cachebust=fbb340e43a0602e1 | { head -1; grep ",CA-ON,"; } > data/csv/distancing_data.csv
echo "done."
\ No newline at end of file
......@@ -8,6 +8,7 @@ using Plots
using DataFrames
using Distributions
using StatsBase
import StatsBase:mean
using Dates
using ThreadsX
using DelimitedFiles
......@@ -28,12 +29,14 @@ include("graphs.jl")
const population = 14.57e6 #population of ontario
const color_palette = palette(:seaborn_bright) #color theme for the plots
const age_bins = [(0.0, 20.0),(20.0,60.0),(60.0,Inf)]
const age_bins = [(0.0, 25.0),(25.0,65.0),(65.0,Inf)]
const PACKAGE_FOLDER = dirname(dirname(pathof(CovidAlertVaccinationModel)))
const infection_data = parse_cases_data()
const demographic_distribution = get_canada_demographic_distribution()
#shift distribution,shift means, geometric changes to poisson if mean goes below 1
#ZW expectation is (1 - α)(expecation of base distribution)
#expectation/(1 - α)
# CUDA.allowscalar(false)
......@@ -42,26 +45,16 @@ default(framestyle = :box)
using BenchmarkTools
function main()
vaccination_rate_test(5000,0.1,vaccinate_uniformly!)
rng = Xoroshiro128Plus()
agent_model = AgentModel(rng,50,2)
u_0 = get_u_0(rng,length(agent_model.demographics))
steps = 10
sol1,graphs = solve!(rng,u_0,get_parameters(),steps,agent_model,vaccinate_uniformly!);
plot_model(agent_model.base_network,graphs,sol1)
# @btime solve!($u_0,$base_network,$params,$steps,$r,$pop_list,$index_vectors,vaccinate_uniformly!);
end
#returns the total infected given a certain num_households, vaccines per day, and strategy
function vaccination_rate_test(num_households,vac_per_day,vac_strategy; rng = Xoroshiro128Plus())
agent_model = AgentModel(rng,num_households,2)
agent_model = AgentModel(rng,500,2)
u_0 = get_u_0(rng,length(agent_model.demographics))
params = merge(get_parameters(),(vaccines_per_day = vac_per_day,))
steps = 300
sol1,graphs = solve!(rng,u_0,params,steps,agent_model,vaccinate_uniformly!);
total_infections = count(x->x == Recovered,sol1[end])
# sol1,graphs = solve!(rng,u_0,get_parameters(),steps,agent_model,vaccinate_uniformly!);
# plot_model(agent_model.base_network,graphs,sol1)